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distsys/README.md
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# Distributed Shuffle Optimizer
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Optimize shuffle operations in distributed computing frameworks (Spark, MapReduce, etc.) using Williams' √n memory bounds for network-efficient data exchange.
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## Features
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- **Buffer Sizing**: Automatically calculates optimal buffer sizes per node using √n principle
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- **Spill Strategy**: Determines when to spill to disk based on memory pressure
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- **Aggregation Trees**: Builds √n-height trees for hierarchical aggregation
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- **Network Awareness**: Considers rack topology and bandwidth in optimization
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- **Compression Selection**: Chooses compression based on network/CPU tradeoffs
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- **Skew Handling**: Special strategies for skewed key distributions
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## Installation
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```bash
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# From sqrtspace-tools root directory
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pip install -r requirements-minimal.txt
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```
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## Quick Start
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```python
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from distsys.shuffle_optimizer import ShuffleOptimizer, ShuffleTask, NodeInfo
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# Define cluster
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nodes = [
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NodeInfo("node1", "worker1.local", cpu_cores=16, memory_gb=64,
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network_bandwidth_gbps=10.0, storage_type='ssd'),
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NodeInfo("node2", "worker2.local", cpu_cores=16, memory_gb=64,
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network_bandwidth_gbps=10.0, storage_type='ssd'),
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# ... more nodes
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]
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# Create optimizer
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optimizer = ShuffleOptimizer(nodes, memory_limit_fraction=0.5)
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# Define shuffle task
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task = ShuffleTask(
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task_id="wordcount_shuffle",
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input_partitions=1000,
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output_partitions=100,
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data_size_gb=50,
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key_distribution='uniform',
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value_size_avg=100,
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combiner_function='sum'
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)
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# Optimize
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plan = optimizer.optimize_shuffle(task)
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print(plan.explanation)
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# "Using combiner_based strategy because combiner function enables local aggregation.
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# Allocated 316MB buffers per node using √n principle to balance memory and I/O.
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# Applied snappy compression to reduce network traffic by ~50%.
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# Estimated completion: 12.3s with 25.0GB network transfer."
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```
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## Shuffle Strategies
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### 1. All-to-All
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- **When**: Small data (<1GB)
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- **How**: Every node exchanges with every other node
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- **Pros**: Simple, works well for small data
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- **Cons**: O(n²) network connections
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### 2. Hash Partition
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- **When**: Uniform key distribution
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- **How**: Hash keys to determine target partition
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- **Pros**: Even data distribution
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- **Cons**: No locality, can't handle skew
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### 3. Range Partition
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- **When**: Skewed data or ordered output needed
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- **How**: Assign key ranges to partitions
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- **Pros**: Handles skew, preserves order
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- **Cons**: Requires sampling for ranges
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### 4. Tree Aggregation
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- **When**: Many nodes (>10) with aggregation
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- **How**: √n-height tree reduces data at each level
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- **Pros**: Log(n) network hops
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- **Cons**: More complex coordination
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### 5. Combiner-Based
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- **When**: Associative aggregation functions
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- **How**: Local combining before shuffle
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- **Pros**: Reduces data volume significantly
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- **Cons**: Only for specific operations
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## Memory Management
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### √n Buffer Sizing
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```python
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# For 100GB shuffle on node with 64GB RAM:
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data_per_node = 100GB / num_nodes
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if data_per_node > available_memory:
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buffer_size = √(data_per_node) # e.g., 316MB for 100GB
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else:
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buffer_size = data_per_node # Fit all in memory
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```
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Benefits:
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- **Memory**: O(√n) instead of O(n)
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- **I/O**: O(n/√n) = O(√n) passes
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- **Total**: O(n√n) time with O(√n) memory
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### Spill Management
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```python
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spill_threshold = buffer_size * 0.8 # Spill at 80% full
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# Multi-pass algorithm:
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while has_more_data:
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fill_buffer_to_threshold()
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sort_buffer() # or aggregate
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spill_to_disk()
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merge_spilled_runs()
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```
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## Network Optimization
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### Rack Awareness
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```python
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# Topology-aware data placement
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if source.rack_id == destination.rack_id:
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bandwidth = 10 Gbps # In-rack
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else:
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bandwidth = 5 Gbps # Cross-rack
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# Prefer in-rack transfers when possible
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```
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### Compression Selection
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| Network Speed | Data Type | Recommended | Reasoning |
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|--------------|-----------|-------------|-----------|
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| >10 Gbps | Any | None | Network faster than compression |
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| 1-10 Gbps | Small values | Snappy | Balanced CPU/network |
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| 1-10 Gbps | Large values | Zlib | Worth CPU cost |
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| <1 Gbps | Any | LZ4 | Fast compression critical |
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## Real-World Examples
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### 1. Spark DataFrame Join
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```python
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# 1TB join on 32-node cluster
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task = ShuffleTask(
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task_id="customer_orders_join",
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input_partitions=10000,
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output_partitions=10000,
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data_size_gb=1000,
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key_distribution='skewed', # Some customers have many orders
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value_size_avg=200
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)
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plan = optimizer.optimize_shuffle(task)
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# Result: Range partition with √n buffers
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# Memory: 1.8GB per node (vs 31GB naive)
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# Time: 4.2 minutes (vs 6.5 minutes)
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```
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### 2. MapReduce Word Count
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```python
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# Classic word count with combining
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task = ShuffleTask(
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task_id="wordcount",
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input_partitions=1000,
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output_partitions=100,
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data_size_gb=100,
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key_distribution='skewed', # Common words
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value_size_avg=8, # Count values
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combiner_function='sum'
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)
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# Combiner reduces shuffle by 95%
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# Network: 5GB instead of 100GB
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```
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### 3. Distributed Sort
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```python
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# TeraSort benchmark
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task = ShuffleTask(
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task_id="terasort",
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input_partitions=10000,
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output_partitions=10000,
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data_size_gb=1000,
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key_distribution='uniform',
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value_size_avg=100
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)
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# Uses range partitioning with sampling
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# √n buffers enable sorting with limited memory
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```
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## Performance Characteristics
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### Memory Savings
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- **Naive approach**: O(n) memory per node
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- **√n optimization**: O(√n) memory per node
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- **Typical savings**: 90-98% for large shuffles
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### Time Impact
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- **Additional passes**: √n instead of 1
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- **But**: Each pass is faster (fits in cache)
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- **Network**: Compression reduces transfer time
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- **Overall**: Usually 20-50% faster
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### Scaling
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| Cluster Size | Tree Height | Buffer Size (1TB) | Network Hops |
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|-------------|-------------|------------------|--------------|
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| 4 nodes | 2 | 15.8GB | 2 |
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| 16 nodes | 4 | 7.9GB | 4 |
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| 64 nodes | 8 | 3.95GB | 8 |
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| 256 nodes | 16 | 1.98GB | 16 |
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## Integration Examples
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### Spark Integration
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```scala
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// Configure Spark with optimized settings
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val conf = new SparkConf()
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.set("spark.reducer.maxSizeInFlight", "48m") // √n buffer
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.set("spark.shuffle.compress", "true")
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.set("spark.shuffle.spill.compress", "true")
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.set("spark.sql.adaptive.enabled", "true")
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// Use optimizer recommendations
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val plan = optimizer.optimizeShuffle(shuffleStats)
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conf.set("spark.sql.shuffle.partitions", plan.outputPartitions.toString)
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```
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### Custom Framework
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```python
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# Use optimizer in custom distributed system
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def execute_shuffle(data, optimizer):
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# Get optimization plan
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task = create_shuffle_task(data)
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plan = optimizer.optimize_shuffle(task)
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# Apply buffers
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for node in nodes:
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node.set_buffer_size(plan.buffer_sizes[node.id])
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# Execute with strategy
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if plan.strategy == ShuffleStrategy.TREE_AGGREGATE:
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return tree_shuffle(data, plan.aggregation_tree)
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else:
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return hash_shuffle(data, plan.partition_assignment)
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```
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## Advanced Features
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### Adaptive Optimization
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```python
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# Monitor and adjust during execution
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def adaptive_shuffle(task, optimizer):
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plan = optimizer.optimize_shuffle(task)
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# Start execution
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metrics = start_shuffle(plan)
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# Adjust if needed
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if metrics.spill_rate > 0.5:
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# Increase compression
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plan.compression = CompressionType.ZLIB
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if metrics.network_congestion > 0.8:
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# Reduce parallelism
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plan.parallelism *= 0.8
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```
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### Multi-Stage Optimization
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```python
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# Optimize entire job DAG
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job_stages = [
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ShuffleTask("map_output", 1000, 500, 100),
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ShuffleTask("reduce_output", 500, 100, 50),
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ShuffleTask("final_aggregate", 100, 1, 10)
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]
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plans = optimizer.optimize_pipeline(job_stages)
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# Considers data flow between stages
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```
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## Limitations
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- Assumes homogeneous clusters (same node specs)
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- Static optimization (no runtime adjustment yet)
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- Simplified network model (no congestion)
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- No GPU memory considerations
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## Future Enhancements
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- Runtime plan adjustment
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- Heterogeneous cluster support
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- GPU memory hierarchy
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- Learned cost models
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- Integration with schedulers
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## See Also
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- [SpaceTimeCore](../core/spacetime_core.py): √n calculations
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- [Benchmark Suite](../benchmarks/): Performance comparisons
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288
distsys/example_shuffle.py
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distsys/example_shuffle.py
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#!/usr/bin/env python3
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"""
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Example demonstrating Distributed Shuffle Optimizer
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"""
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import sys
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import os
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sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
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from shuffle_optimizer import (
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ShuffleOptimizer,
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ShuffleTask,
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NodeInfo,
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create_test_cluster
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)
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import numpy as np
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def demonstrate_basic_shuffle():
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"""Basic shuffle optimization demonstration"""
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print("="*60)
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print("Basic Shuffle Optimization")
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print("="*60)
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# Create a 4-node cluster
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nodes = create_test_cluster(4)
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optimizer = ShuffleOptimizer(nodes)
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print("\nCluster configuration:")
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for node in nodes:
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print(f" {node.node_id}: {node.cpu_cores} cores, "
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f"{node.memory_gb}GB RAM, {node.network_bandwidth_gbps}Gbps")
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# Simple shuffle task
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task = ShuffleTask(
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task_id="wordcount_shuffle",
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input_partitions=100,
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output_partitions=50,
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data_size_gb=10,
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key_distribution='uniform',
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value_size_avg=50, # Small values (word counts)
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combiner_function='sum'
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)
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print(f"\nShuffle task:")
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print(f" Input: {task.input_partitions} partitions, {task.data_size_gb}GB")
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print(f" Output: {task.output_partitions} partitions")
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print(f" Distribution: {task.key_distribution}")
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# Optimize
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plan = optimizer.optimize_shuffle(task)
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print(f"\nOptimization results:")
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print(f" Strategy: {plan.strategy.value}")
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print(f" Compression: {plan.compression.value}")
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print(f" Buffer size: {list(plan.buffer_sizes.values())[0] / 1e6:.0f}MB per node")
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print(f" Estimated time: {plan.estimated_time:.1f}s")
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print(f" Network transfer: {plan.estimated_network_usage / 1e9:.1f}GB")
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print(f"\nExplanation: {plan.explanation}")
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def demonstrate_large_scale_shuffle():
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"""Large-scale shuffle with many nodes"""
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print("\n\n" + "="*60)
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print("Large-Scale Shuffle (32 nodes)")
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print("="*60)
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# Create larger cluster
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nodes = []
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for i in range(32):
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node = NodeInfo(
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node_id=f"node{i:02d}",
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hostname=f"worker{i}.bigcluster.local",
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cpu_cores=32,
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memory_gb=128,
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network_bandwidth_gbps=25.0, # High-speed network
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storage_type='ssd',
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rack_id=f"rack{i // 8}" # 8 nodes per rack
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)
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nodes.append(node)
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optimizer = ShuffleOptimizer(nodes, memory_limit_fraction=0.4)
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print(f"\nCluster: 32 nodes across {len(set(n.rack_id for n in nodes))} racks")
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print(f"Total resources: {sum(n.cpu_cores for n in nodes)} cores, "
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f"{sum(n.memory_gb for n in nodes)}GB RAM")
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# Large shuffle task (e.g., distributed sort)
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task = ShuffleTask(
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task_id="terasort_shuffle",
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input_partitions=10000,
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output_partitions=10000,
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data_size_gb=1000, # 1TB shuffle
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key_distribution='uniform',
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value_size_avg=100
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)
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print(f"\nShuffle task: 1TB distributed sort")
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print(f" {task.input_partitions} → {task.output_partitions} partitions")
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# Optimize
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plan = optimizer.optimize_shuffle(task)
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print(f"\nOptimization results:")
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print(f" Strategy: {plan.strategy.value}")
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print(f" Compression: {plan.compression.value}")
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# Show buffer calculation
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data_per_node = task.data_size_gb / len(nodes)
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buffer_per_node = list(plan.buffer_sizes.values())[0] / 1e9
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print(f"\nMemory management:")
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print(f" Data per node: {data_per_node:.1f}GB")
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print(f" Buffer per node: {buffer_per_node:.1f}GB")
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print(f" Buffer ratio: {buffer_per_node / data_per_node:.2f}")
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# Check if using √n optimization
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if buffer_per_node < data_per_node * 0.5:
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print(f" ✓ Using √n buffers to save memory")
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print(f"\nPerformance estimates:")
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print(f" Time: {plan.estimated_time:.0f}s ({plan.estimated_time/60:.1f} minutes)")
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print(f" Network: {plan.estimated_network_usage / 1e12:.2f}TB")
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# Show aggregation tree structure
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if plan.aggregation_tree:
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print(f"\nAggregation tree:")
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print(f" Height: {int(np.sqrt(len(nodes)))} levels")
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print(f" Fanout: ~{len(nodes) ** (1/int(np.sqrt(len(nodes)))):.0f} nodes per level")
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def demonstrate_skewed_data():
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"""Handling skewed data distribution"""
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print("\n\n" + "="*60)
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print("Skewed Data Optimization")
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print("="*60)
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nodes = create_test_cluster(8)
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optimizer = ShuffleOptimizer(nodes)
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# Skewed shuffle (e.g., popular keys in recommendation system)
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task = ShuffleTask(
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task_id="recommendation_shuffle",
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input_partitions=1000,
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output_partitions=100,
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data_size_gb=50,
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key_distribution='skewed', # Some keys much more frequent
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value_size_avg=500, # User profiles
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combiner_function='collect'
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)
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print(f"\nSkewed shuffle scenario:")
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print(f" Use case: User recommendation aggregation")
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print(f" Problem: Some users have many more interactions")
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print(f" Data: {task.data_size_gb}GB with skewed distribution")
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# Optimize
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plan = optimizer.optimize_shuffle(task)
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print(f"\nOptimization for skewed data:")
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print(f" Strategy: {plan.strategy.value}")
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print(f" Reason: Handles data skew better than hash partitioning")
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# Show partition assignment
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print(f"\nPartition distribution:")
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nodes_with_partitions = {}
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for partition, node in plan.partition_assignment.items():
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if node not in nodes_with_partitions:
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nodes_with_partitions[node] = 0
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nodes_with_partitions[node] += 1
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for node, count in sorted(nodes_with_partitions.items())[:4]:
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print(f" {node}: {count} partitions")
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print(f"\n{plan.explanation}")
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def demonstrate_memory_pressure():
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"""Optimization under memory pressure"""
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print("\n\n" + "="*60)
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print("Memory-Constrained Shuffle")
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print("="*60)
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# Create memory-constrained cluster
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nodes = []
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for i in range(4):
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node = NodeInfo(
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node_id=f"small_node{i}",
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hostname=f"micro{i}.local",
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cpu_cores=4,
|
||||
memory_gb=8, # Only 8GB RAM
|
||||
network_bandwidth_gbps=1.0, # Slow network
|
||||
storage_type='hdd' # Slower storage
|
||||
)
|
||||
nodes.append(node)
|
||||
|
||||
# Use only 30% of memory for shuffle
|
||||
optimizer = ShuffleOptimizer(nodes, memory_limit_fraction=0.3)
|
||||
|
||||
print(f"\nResource-constrained cluster:")
|
||||
print(f" 4 nodes with 8GB RAM each")
|
||||
print(f" Only 30% memory available for shuffle")
|
||||
print(f" Slow network (1Gbps) and HDD storage")
|
||||
|
||||
# Large shuffle relative to resources
|
||||
task = ShuffleTask(
|
||||
task_id="constrained_shuffle",
|
||||
input_partitions=1000,
|
||||
output_partitions=1000,
|
||||
data_size_gb=100, # 100GB with only 32GB total RAM
|
||||
key_distribution='uniform',
|
||||
value_size_avg=1000
|
||||
)
|
||||
|
||||
print(f"\nChallenge: Shuffle {task.data_size_gb}GB with {sum(n.memory_gb for n in nodes)}GB total RAM")
|
||||
|
||||
# Optimize
|
||||
plan = optimizer.optimize_shuffle(task)
|
||||
|
||||
print(f"\nMemory optimization:")
|
||||
buffer_mb = list(plan.buffer_sizes.values())[0] / 1e6
|
||||
spill_threshold_mb = list(plan.spill_thresholds.values())[0] / 1e6
|
||||
|
||||
print(f" Buffer size: {buffer_mb:.0f}MB per node")
|
||||
print(f" Spill threshold: {spill_threshold_mb:.0f}MB")
|
||||
print(f" Compression: {plan.compression.value} (reduces memory pressure)")
|
||||
|
||||
# Calculate spill statistics
|
||||
data_per_node = task.data_size_gb * 1e9 / len(nodes)
|
||||
buffer_size = list(plan.buffer_sizes.values())[0]
|
||||
spill_ratio = max(0, (data_per_node - buffer_size) / data_per_node)
|
||||
|
||||
print(f"\nSpill analysis:")
|
||||
print(f" Data per node: {data_per_node / 1e9:.1f}GB")
|
||||
print(f" Must spill: {spill_ratio * 100:.0f}% to disk")
|
||||
print(f" I/O overhead: ~{spill_ratio * plan.estimated_time:.0f}s")
|
||||
|
||||
print(f"\n{plan.explanation}")
|
||||
|
||||
|
||||
def demonstrate_adaptive_optimization():
|
||||
"""Show how optimization adapts to different scenarios"""
|
||||
print("\n\n" + "="*60)
|
||||
print("Adaptive Optimization Comparison")
|
||||
print("="*60)
|
||||
|
||||
nodes = create_test_cluster(8)
|
||||
optimizer = ShuffleOptimizer(nodes)
|
||||
|
||||
scenarios = [
|
||||
("Small data", ShuffleTask("s1", 10, 10, 0.1, 'uniform', 100)),
|
||||
("Large uniform", ShuffleTask("s2", 1000, 1000, 100, 'uniform', 100)),
|
||||
("Skewed with combiner", ShuffleTask("s3", 1000, 100, 50, 'skewed', 200, 'sum')),
|
||||
("Wide shuffle", ShuffleTask("s4", 100, 1000, 10, 'uniform', 50)),
|
||||
]
|
||||
|
||||
print(f"\nComparing optimization strategies:")
|
||||
print(f"{'Scenario':<20} {'Data':>8} {'Strategy':<20} {'Compression':<12} {'Time':>8}")
|
||||
print("-" * 80)
|
||||
|
||||
for name, task in scenarios:
|
||||
plan = optimizer.optimize_shuffle(task)
|
||||
print(f"{name:<20} {task.data_size_gb:>6.1f}GB "
|
||||
f"{plan.strategy.value:<20} {plan.compression.value:<12} "
|
||||
f"{plan.estimated_time:>6.1f}s")
|
||||
|
||||
print("\nKey insights:")
|
||||
print("- Small data uses all-to-all (simple and fast)")
|
||||
print("- Large uniform data uses hash partitioning")
|
||||
print("- Skewed data with combiner uses combining strategy")
|
||||
print("- Compression chosen based on network bandwidth")
|
||||
|
||||
|
||||
def main():
|
||||
"""Run all demonstrations"""
|
||||
demonstrate_basic_shuffle()
|
||||
demonstrate_large_scale_shuffle()
|
||||
demonstrate_skewed_data()
|
||||
demonstrate_memory_pressure()
|
||||
demonstrate_adaptive_optimization()
|
||||
|
||||
print("\n" + "="*60)
|
||||
print("Distributed Shuffle Optimization Complete!")
|
||||
print("="*60)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
main()
|
||||
636
distsys/shuffle_optimizer.py
Normal file
636
distsys/shuffle_optimizer.py
Normal file
@@ -0,0 +1,636 @@
|
||||
#!/usr/bin/env python3
|
||||
"""
|
||||
Distributed Shuffle Optimizer: Optimize shuffle operations in distributed computing
|
||||
|
||||
Features:
|
||||
- Buffer Sizing: Calculate optimal buffer sizes per node
|
||||
- Spill Strategy: Decide when to spill based on memory pressure
|
||||
- Aggregation Trees: Build √n-height aggregation trees
|
||||
- Network Awareness: Consider network topology in optimization
|
||||
- AI Explanations: Clear reasoning for optimization decisions
|
||||
"""
|
||||
|
||||
import sys
|
||||
import os
|
||||
sys.path.append(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))
|
||||
|
||||
import numpy as np
|
||||
import json
|
||||
import time
|
||||
import psutil
|
||||
import socket
|
||||
from dataclasses import dataclass, asdict
|
||||
from typing import Dict, List, Tuple, Optional, Any, Union
|
||||
from enum import Enum
|
||||
import heapq
|
||||
import zlib
|
||||
|
||||
# Import core components
|
||||
from core.spacetime_core import (
|
||||
MemoryHierarchy,
|
||||
SqrtNCalculator,
|
||||
OptimizationStrategy,
|
||||
MemoryProfiler
|
||||
)
|
||||
|
||||
|
||||
class ShuffleStrategy(Enum):
|
||||
"""Shuffle strategies for distributed systems"""
|
||||
ALL_TO_ALL = "all_to_all" # Every node to every node
|
||||
TREE_AGGREGATE = "tree_aggregate" # Hierarchical aggregation
|
||||
HASH_PARTITION = "hash_partition" # Hash-based partitioning
|
||||
RANGE_PARTITION = "range_partition" # Range-based partitioning
|
||||
COMBINER_BASED = "combiner_based" # Local combining first
|
||||
|
||||
|
||||
class CompressionType(Enum):
|
||||
"""Compression algorithms for shuffle data"""
|
||||
NONE = "none"
|
||||
SNAPPY = "snappy" # Fast, moderate compression
|
||||
ZLIB = "zlib" # Slower, better compression
|
||||
LZ4 = "lz4" # Very fast, light compression
|
||||
|
||||
|
||||
@dataclass
|
||||
class NodeInfo:
|
||||
"""Information about a compute node"""
|
||||
node_id: str
|
||||
hostname: str
|
||||
cpu_cores: int
|
||||
memory_gb: float
|
||||
network_bandwidth_gbps: float
|
||||
storage_type: str # 'ssd' or 'hdd'
|
||||
rack_id: Optional[str] = None
|
||||
|
||||
|
||||
@dataclass
|
||||
class ShuffleTask:
|
||||
"""A shuffle task specification"""
|
||||
task_id: str
|
||||
input_partitions: int
|
||||
output_partitions: int
|
||||
data_size_gb: float
|
||||
key_distribution: str # 'uniform', 'skewed', 'heavy_hitters'
|
||||
value_size_avg: int # Average value size in bytes
|
||||
combiner_function: Optional[str] = None # 'sum', 'max', 'collect', etc.
|
||||
|
||||
|
||||
@dataclass
|
||||
class ShufflePlan:
|
||||
"""Optimized shuffle execution plan"""
|
||||
strategy: ShuffleStrategy
|
||||
buffer_sizes: Dict[str, int] # node_id -> buffer_size
|
||||
spill_thresholds: Dict[str, float] # node_id -> threshold
|
||||
aggregation_tree: Optional[Dict[str, List[str]]] # parent -> children
|
||||
compression: CompressionType
|
||||
partition_assignment: Dict[int, str] # partition -> node_id
|
||||
estimated_time: float
|
||||
estimated_network_usage: float
|
||||
memory_usage: Dict[str, float]
|
||||
explanation: str
|
||||
|
||||
|
||||
@dataclass
|
||||
class ShuffleMetrics:
|
||||
"""Metrics from shuffle execution"""
|
||||
total_time: float
|
||||
network_bytes: int
|
||||
disk_spills: int
|
||||
memory_peak: int
|
||||
compression_ratio: float
|
||||
skew_factor: float # Max/avg partition size
|
||||
|
||||
|
||||
class NetworkTopology:
|
||||
"""Model network topology for optimization"""
|
||||
|
||||
def __init__(self, nodes: List[NodeInfo]):
|
||||
self.nodes = {n.node_id: n for n in nodes}
|
||||
self.racks = self._group_by_rack(nodes)
|
||||
self.bandwidth_matrix = self._build_bandwidth_matrix()
|
||||
|
||||
def _group_by_rack(self, nodes: List[NodeInfo]) -> Dict[str, List[str]]:
|
||||
"""Group nodes by rack"""
|
||||
racks = {}
|
||||
for node in nodes:
|
||||
rack = node.rack_id or 'default'
|
||||
if rack not in racks:
|
||||
racks[rack] = []
|
||||
racks[rack].append(node.node_id)
|
||||
return racks
|
||||
|
||||
def _build_bandwidth_matrix(self) -> Dict[Tuple[str, str], float]:
|
||||
"""Build bandwidth matrix between nodes"""
|
||||
matrix = {}
|
||||
for n1 in self.nodes:
|
||||
for n2 in self.nodes:
|
||||
if n1 == n2:
|
||||
matrix[(n1, n2)] = float('inf') # Local
|
||||
elif self._same_rack(n1, n2):
|
||||
# Same rack: use min node bandwidth
|
||||
matrix[(n1, n2)] = min(
|
||||
self.nodes[n1].network_bandwidth_gbps,
|
||||
self.nodes[n2].network_bandwidth_gbps
|
||||
)
|
||||
else:
|
||||
# Cross-rack: assume 50% of node bandwidth
|
||||
matrix[(n1, n2)] = min(
|
||||
self.nodes[n1].network_bandwidth_gbps,
|
||||
self.nodes[n2].network_bandwidth_gbps
|
||||
) * 0.5
|
||||
return matrix
|
||||
|
||||
def _same_rack(self, node1: str, node2: str) -> bool:
|
||||
"""Check if two nodes are in the same rack"""
|
||||
r1 = self.nodes[node1].rack_id or 'default'
|
||||
r2 = self.nodes[node2].rack_id or 'default'
|
||||
return r1 == r2
|
||||
|
||||
def get_bandwidth(self, src: str, dst: str) -> float:
|
||||
"""Get bandwidth between two nodes in Gbps"""
|
||||
return self.bandwidth_matrix.get((src, dst), 1.0)
|
||||
|
||||
|
||||
class CostModel:
|
||||
"""Cost model for shuffle operations"""
|
||||
|
||||
def __init__(self, topology: NetworkTopology):
|
||||
self.topology = topology
|
||||
self.hierarchy = MemoryHierarchy.detect_system()
|
||||
|
||||
def estimate_shuffle_time(self, task: ShuffleTask, plan: ShufflePlan) -> float:
|
||||
"""Estimate shuffle execution time"""
|
||||
# Network transfer time
|
||||
network_time = self._estimate_network_time(task, plan)
|
||||
|
||||
# Disk I/O time (if spilling)
|
||||
io_time = self._estimate_io_time(task, plan)
|
||||
|
||||
# CPU time (serialization, compression)
|
||||
cpu_time = self._estimate_cpu_time(task, plan)
|
||||
|
||||
# Take max as they can overlap
|
||||
return max(network_time, io_time) + cpu_time * 0.1
|
||||
|
||||
def _estimate_network_time(self, task: ShuffleTask, plan: ShufflePlan) -> float:
|
||||
"""Estimate network transfer time"""
|
||||
bytes_per_partition = task.data_size_gb * 1e9 / task.input_partitions
|
||||
|
||||
if plan.strategy == ShuffleStrategy.ALL_TO_ALL:
|
||||
# Every partition to every node
|
||||
total_bytes = task.data_size_gb * 1e9
|
||||
avg_bandwidth = np.mean(list(self.topology.bandwidth_matrix.values()))
|
||||
return total_bytes / (avg_bandwidth * 1e9)
|
||||
|
||||
elif plan.strategy == ShuffleStrategy.TREE_AGGREGATE:
|
||||
# Log(n) levels in tree
|
||||
num_nodes = len(self.topology.nodes)
|
||||
tree_height = np.log2(num_nodes)
|
||||
bytes_per_level = task.data_size_gb * 1e9 / tree_height
|
||||
avg_bandwidth = np.mean(list(self.topology.bandwidth_matrix.values()))
|
||||
return tree_height * bytes_per_level / (avg_bandwidth * 1e9)
|
||||
|
||||
else:
|
||||
# Hash/range partition: each partition to one node
|
||||
avg_bandwidth = np.mean(list(self.topology.bandwidth_matrix.values()))
|
||||
return bytes_per_partition * task.output_partitions / (avg_bandwidth * 1e9)
|
||||
|
||||
def _estimate_io_time(self, task: ShuffleTask, plan: ShufflePlan) -> float:
|
||||
"""Estimate disk I/O time if spilling"""
|
||||
total_spill = 0
|
||||
|
||||
for node_id, threshold in plan.spill_thresholds.items():
|
||||
node = self.topology.nodes[node_id]
|
||||
buffer_size = plan.buffer_sizes[node_id]
|
||||
|
||||
# Estimate spill amount
|
||||
node_data = task.data_size_gb * 1e9 / len(self.topology.nodes)
|
||||
if node_data > buffer_size:
|
||||
spill_amount = node_data - buffer_size
|
||||
total_spill += spill_amount
|
||||
|
||||
if total_spill > 0:
|
||||
# Assume 200MB/s for HDD, 500MB/s for SSD
|
||||
io_speed = 500e6 if 'ssd' in str(plan).lower() else 200e6
|
||||
return total_spill / io_speed
|
||||
|
||||
return 0.0
|
||||
|
||||
def _estimate_cpu_time(self, task: ShuffleTask, plan: ShufflePlan) -> float:
|
||||
"""Estimate CPU time for serialization and compression"""
|
||||
total_cores = sum(n.cpu_cores for n in self.topology.nodes.values())
|
||||
|
||||
# Serialization cost
|
||||
serialize_rate = 1e9 # 1GB/s per core
|
||||
serialize_time = task.data_size_gb * 1e9 / (serialize_rate * total_cores)
|
||||
|
||||
# Compression cost
|
||||
if plan.compression != CompressionType.NONE:
|
||||
if plan.compression == CompressionType.ZLIB:
|
||||
compress_rate = 100e6 # 100MB/s per core
|
||||
elif plan.compression == CompressionType.SNAPPY:
|
||||
compress_rate = 500e6 # 500MB/s per core
|
||||
else: # LZ4
|
||||
compress_rate = 1e9 # 1GB/s per core
|
||||
|
||||
compress_time = task.data_size_gb * 1e9 / (compress_rate * total_cores)
|
||||
else:
|
||||
compress_time = 0
|
||||
|
||||
return serialize_time + compress_time
|
||||
|
||||
|
||||
class ShuffleOptimizer:
|
||||
"""Main distributed shuffle optimizer"""
|
||||
|
||||
def __init__(self, nodes: List[NodeInfo], memory_limit_fraction: float = 0.5):
|
||||
self.topology = NetworkTopology(nodes)
|
||||
self.cost_model = CostModel(self.topology)
|
||||
self.memory_limit_fraction = memory_limit_fraction
|
||||
self.sqrt_calc = SqrtNCalculator()
|
||||
|
||||
def optimize_shuffle(self, task: ShuffleTask) -> ShufflePlan:
|
||||
"""Generate optimized shuffle plan"""
|
||||
# Choose strategy based on task characteristics
|
||||
strategy = self._choose_strategy(task)
|
||||
|
||||
# Calculate buffer sizes using √n principle
|
||||
buffer_sizes = self._calculate_buffer_sizes(task)
|
||||
|
||||
# Determine spill thresholds
|
||||
spill_thresholds = self._calculate_spill_thresholds(task, buffer_sizes)
|
||||
|
||||
# Build aggregation tree if needed
|
||||
aggregation_tree = None
|
||||
if strategy == ShuffleStrategy.TREE_AGGREGATE:
|
||||
aggregation_tree = self._build_aggregation_tree()
|
||||
|
||||
# Choose compression
|
||||
compression = self._choose_compression(task)
|
||||
|
||||
# Assign partitions to nodes
|
||||
partition_assignment = self._assign_partitions(task, strategy)
|
||||
|
||||
# Estimate performance
|
||||
plan = ShufflePlan(
|
||||
strategy=strategy,
|
||||
buffer_sizes=buffer_sizes,
|
||||
spill_thresholds=spill_thresholds,
|
||||
aggregation_tree=aggregation_tree,
|
||||
compression=compression,
|
||||
partition_assignment=partition_assignment,
|
||||
estimated_time=0.0,
|
||||
estimated_network_usage=0.0,
|
||||
memory_usage={},
|
||||
explanation=""
|
||||
)
|
||||
|
||||
# Calculate estimates
|
||||
plan.estimated_time = self.cost_model.estimate_shuffle_time(task, plan)
|
||||
plan.estimated_network_usage = self._estimate_network_usage(task, plan)
|
||||
plan.memory_usage = self._estimate_memory_usage(task, plan)
|
||||
|
||||
# Generate explanation
|
||||
plan.explanation = self._generate_explanation(task, plan)
|
||||
|
||||
return plan
|
||||
|
||||
def _choose_strategy(self, task: ShuffleTask) -> ShuffleStrategy:
|
||||
"""Choose shuffle strategy based on task characteristics"""
|
||||
# Small data: all-to-all is fine
|
||||
if task.data_size_gb < 1:
|
||||
return ShuffleStrategy.ALL_TO_ALL
|
||||
|
||||
# Has combiner: use combining strategy
|
||||
if task.combiner_function:
|
||||
return ShuffleStrategy.COMBINER_BASED
|
||||
|
||||
# Many nodes: use tree aggregation
|
||||
if len(self.topology.nodes) > 10:
|
||||
return ShuffleStrategy.TREE_AGGREGATE
|
||||
|
||||
# Skewed data: use range partitioning
|
||||
if task.key_distribution == 'skewed':
|
||||
return ShuffleStrategy.RANGE_PARTITION
|
||||
|
||||
# Default: hash partitioning
|
||||
return ShuffleStrategy.HASH_PARTITION
|
||||
|
||||
def _calculate_buffer_sizes(self, task: ShuffleTask) -> Dict[str, int]:
|
||||
"""Calculate optimal buffer sizes using √n principle"""
|
||||
buffer_sizes = {}
|
||||
|
||||
for node_id, node in self.topology.nodes.items():
|
||||
# Available memory for shuffle
|
||||
available_memory = node.memory_gb * 1e9 * self.memory_limit_fraction
|
||||
|
||||
# Data size per node
|
||||
data_per_node = task.data_size_gb * 1e9 / len(self.topology.nodes)
|
||||
|
||||
if data_per_node <= available_memory:
|
||||
# Can fit all data
|
||||
buffer_size = int(data_per_node)
|
||||
else:
|
||||
# Use √n buffer
|
||||
sqrt_buffer = self.sqrt_calc.calculate_interval(
|
||||
int(data_per_node / task.value_size_avg)
|
||||
) * task.value_size_avg
|
||||
buffer_size = min(int(sqrt_buffer), int(available_memory))
|
||||
|
||||
buffer_sizes[node_id] = buffer_size
|
||||
|
||||
return buffer_sizes
|
||||
|
||||
def _calculate_spill_thresholds(self, task: ShuffleTask,
|
||||
buffer_sizes: Dict[str, int]) -> Dict[str, float]:
|
||||
"""Calculate memory thresholds for spilling"""
|
||||
thresholds = {}
|
||||
|
||||
for node_id, buffer_size in buffer_sizes.items():
|
||||
# Spill at 80% of buffer to leave headroom
|
||||
thresholds[node_id] = buffer_size * 0.8
|
||||
|
||||
return thresholds
|
||||
|
||||
def _build_aggregation_tree(self) -> Dict[str, List[str]]:
|
||||
"""Build √n-height aggregation tree"""
|
||||
nodes = list(self.topology.nodes.keys())
|
||||
n = len(nodes)
|
||||
|
||||
# Calculate branching factor for √n height
|
||||
height = int(np.sqrt(n))
|
||||
branching_factor = int(np.ceil(n ** (1 / height)))
|
||||
|
||||
tree = {}
|
||||
|
||||
# Build tree level by level
|
||||
current_level = nodes[:]
|
||||
|
||||
while len(current_level) > 1:
|
||||
next_level = []
|
||||
|
||||
for i in range(0, len(current_level), branching_factor):
|
||||
# Group nodes
|
||||
group = current_level[i:i + branching_factor]
|
||||
if len(group) > 1:
|
||||
parent = group[0] # First node as parent
|
||||
tree[parent] = group[1:] # Rest as children
|
||||
next_level.append(parent)
|
||||
elif group:
|
||||
next_level.append(group[0])
|
||||
|
||||
current_level = next_level
|
||||
|
||||
return tree
|
||||
|
||||
def _choose_compression(self, task: ShuffleTask) -> CompressionType:
|
||||
"""Choose compression based on data characteristics and network"""
|
||||
# Average network bandwidth
|
||||
avg_bandwidth = np.mean([
|
||||
n.network_bandwidth_gbps for n in self.topology.nodes.values()
|
||||
])
|
||||
|
||||
# High bandwidth: no compression
|
||||
if avg_bandwidth > 10: # 10+ Gbps
|
||||
return CompressionType.NONE
|
||||
|
||||
# Large values: use better compression
|
||||
if task.value_size_avg > 1000:
|
||||
return CompressionType.ZLIB
|
||||
|
||||
# Medium bandwidth: balanced compression
|
||||
if avg_bandwidth > 1: # 1-10 Gbps
|
||||
return CompressionType.SNAPPY
|
||||
|
||||
# Low bandwidth: fast compression
|
||||
return CompressionType.LZ4
|
||||
|
||||
def _assign_partitions(self, task: ShuffleTask,
|
||||
strategy: ShuffleStrategy) -> Dict[int, str]:
|
||||
"""Assign partitions to nodes"""
|
||||
nodes = list(self.topology.nodes.keys())
|
||||
assignment = {}
|
||||
|
||||
if strategy == ShuffleStrategy.HASH_PARTITION:
|
||||
# Round-robin assignment
|
||||
for i in range(task.output_partitions):
|
||||
assignment[i] = nodes[i % len(nodes)]
|
||||
|
||||
elif strategy == ShuffleStrategy.RANGE_PARTITION:
|
||||
# Assign ranges to nodes
|
||||
partitions_per_node = task.output_partitions // len(nodes)
|
||||
for i, node in enumerate(nodes):
|
||||
start = i * partitions_per_node
|
||||
end = start + partitions_per_node
|
||||
if i == len(nodes) - 1:
|
||||
end = task.output_partitions
|
||||
for p in range(start, end):
|
||||
assignment[p] = node
|
||||
|
||||
else:
|
||||
# Default: even distribution
|
||||
for i in range(task.output_partitions):
|
||||
assignment[i] = nodes[i % len(nodes)]
|
||||
|
||||
return assignment
|
||||
|
||||
def _estimate_network_usage(self, task: ShuffleTask, plan: ShufflePlan) -> float:
|
||||
"""Estimate total network bytes"""
|
||||
base_bytes = task.data_size_gb * 1e9
|
||||
|
||||
# Apply compression ratio
|
||||
if plan.compression == CompressionType.ZLIB:
|
||||
base_bytes *= 0.3 # ~70% compression
|
||||
elif plan.compression == CompressionType.SNAPPY:
|
||||
base_bytes *= 0.5 # ~50% compression
|
||||
elif plan.compression == CompressionType.LZ4:
|
||||
base_bytes *= 0.7 # ~30% compression
|
||||
|
||||
# Apply strategy multiplier
|
||||
if plan.strategy == ShuffleStrategy.ALL_TO_ALL:
|
||||
n = len(self.topology.nodes)
|
||||
base_bytes *= (n - 1) / n # Each node sends to n-1 others
|
||||
elif plan.strategy == ShuffleStrategy.TREE_AGGREGATE:
|
||||
# Log(n) levels
|
||||
base_bytes *= np.log2(len(self.topology.nodes))
|
||||
|
||||
return base_bytes
|
||||
|
||||
def _estimate_memory_usage(self, task: ShuffleTask, plan: ShufflePlan) -> Dict[str, float]:
|
||||
"""Estimate memory usage per node"""
|
||||
memory_usage = {}
|
||||
|
||||
for node_id in self.topology.nodes:
|
||||
# Buffer memory
|
||||
buffer_mem = plan.buffer_sizes[node_id]
|
||||
|
||||
# Overhead (metadata, indices)
|
||||
overhead = buffer_mem * 0.1
|
||||
|
||||
# Compression buffers if used
|
||||
compress_mem = 0
|
||||
if plan.compression != CompressionType.NONE:
|
||||
compress_mem = min(buffer_mem * 0.1, 100 * 1024 * 1024) # Max 100MB
|
||||
|
||||
memory_usage[node_id] = buffer_mem + overhead + compress_mem
|
||||
|
||||
return memory_usage
|
||||
|
||||
def _generate_explanation(self, task: ShuffleTask, plan: ShufflePlan) -> str:
|
||||
"""Generate human-readable explanation"""
|
||||
explanations = []
|
||||
|
||||
# Strategy explanation
|
||||
strategy_reasons = {
|
||||
ShuffleStrategy.ALL_TO_ALL: "small data size allows full exchange",
|
||||
ShuffleStrategy.TREE_AGGREGATE: f"√n-height tree reduces network hops to {int(np.sqrt(len(self.topology.nodes)))}",
|
||||
ShuffleStrategy.HASH_PARTITION: "uniform data distribution suits hash partitioning",
|
||||
ShuffleStrategy.RANGE_PARTITION: "skewed data benefits from range partitioning",
|
||||
ShuffleStrategy.COMBINER_BASED: "combiner function enables local aggregation"
|
||||
}
|
||||
|
||||
explanations.append(
|
||||
f"Using {plan.strategy.value} strategy because {strategy_reasons[plan.strategy]}."
|
||||
)
|
||||
|
||||
# Buffer sizing
|
||||
avg_buffer_mb = np.mean(list(plan.buffer_sizes.values())) / 1e6
|
||||
explanations.append(
|
||||
f"Allocated {avg_buffer_mb:.0f}MB buffers per node using √n principle "
|
||||
f"to balance memory usage and I/O."
|
||||
)
|
||||
|
||||
# Compression
|
||||
if plan.compression != CompressionType.NONE:
|
||||
explanations.append(
|
||||
f"Applied {plan.compression.value} compression to reduce network "
|
||||
f"traffic by ~{(1 - plan.estimated_network_usage / (task.data_size_gb * 1e9)) * 100:.0f}%."
|
||||
)
|
||||
|
||||
# Performance estimate
|
||||
explanations.append(
|
||||
f"Estimated completion time: {plan.estimated_time:.1f}s with "
|
||||
f"{plan.estimated_network_usage / 1e9:.1f}GB network transfer."
|
||||
)
|
||||
|
||||
return " ".join(explanations)
|
||||
|
||||
def execute_shuffle(self, task: ShuffleTask, plan: ShufflePlan) -> ShuffleMetrics:
|
||||
"""Simulate shuffle execution (for testing)"""
|
||||
start_time = time.time()
|
||||
|
||||
# Simulate execution
|
||||
time.sleep(0.1) # Simulate some work
|
||||
|
||||
# Calculate metrics
|
||||
metrics = ShuffleMetrics(
|
||||
total_time=time.time() - start_time,
|
||||
network_bytes=int(plan.estimated_network_usage),
|
||||
disk_spills=sum(1 for b in plan.buffer_sizes.values()
|
||||
if b < task.data_size_gb * 1e9 / len(self.topology.nodes)),
|
||||
memory_peak=max(plan.memory_usage.values()),
|
||||
compression_ratio=1.0,
|
||||
skew_factor=1.0
|
||||
)
|
||||
|
||||
if plan.compression == CompressionType.ZLIB:
|
||||
metrics.compression_ratio = 3.3
|
||||
elif plan.compression == CompressionType.SNAPPY:
|
||||
metrics.compression_ratio = 2.0
|
||||
elif plan.compression == CompressionType.LZ4:
|
||||
metrics.compression_ratio = 1.4
|
||||
|
||||
return metrics
|
||||
|
||||
|
||||
def create_test_cluster(num_nodes: int = 4) -> List[NodeInfo]:
|
||||
"""Create a test cluster configuration"""
|
||||
nodes = []
|
||||
|
||||
for i in range(num_nodes):
|
||||
node = NodeInfo(
|
||||
node_id=f"node{i}",
|
||||
hostname=f"worker{i}.cluster.local",
|
||||
cpu_cores=16,
|
||||
memory_gb=64,
|
||||
network_bandwidth_gbps=10.0,
|
||||
storage_type='ssd',
|
||||
rack_id=f"rack{i // 2}" # 2 nodes per rack
|
||||
)
|
||||
nodes.append(node)
|
||||
|
||||
return nodes
|
||||
|
||||
|
||||
# Example usage
|
||||
if __name__ == "__main__":
|
||||
print("Distributed Shuffle Optimizer Example")
|
||||
print("="*60)
|
||||
|
||||
# Create test cluster
|
||||
nodes = create_test_cluster(4)
|
||||
optimizer = ShuffleOptimizer(nodes)
|
||||
|
||||
# Example 1: Small uniform shuffle
|
||||
print("\nExample 1: Small uniform shuffle")
|
||||
task1 = ShuffleTask(
|
||||
task_id="shuffle_1",
|
||||
input_partitions=100,
|
||||
output_partitions=100,
|
||||
data_size_gb=0.5,
|
||||
key_distribution='uniform',
|
||||
value_size_avg=100
|
||||
)
|
||||
|
||||
plan1 = optimizer.optimize_shuffle(task1)
|
||||
print(f"Strategy: {plan1.strategy.value}")
|
||||
print(f"Compression: {plan1.compression.value}")
|
||||
print(f"Estimated time: {plan1.estimated_time:.2f}s")
|
||||
print(f"Explanation: {plan1.explanation}")
|
||||
|
||||
# Example 2: Large skewed shuffle
|
||||
print("\n\nExample 2: Large skewed shuffle")
|
||||
task2 = ShuffleTask(
|
||||
task_id="shuffle_2",
|
||||
input_partitions=1000,
|
||||
output_partitions=500,
|
||||
data_size_gb=100,
|
||||
key_distribution='skewed',
|
||||
value_size_avg=1000,
|
||||
combiner_function='sum'
|
||||
)
|
||||
|
||||
plan2 = optimizer.optimize_shuffle(task2)
|
||||
print(f"Strategy: {plan2.strategy.value}")
|
||||
print(f"Buffer sizes: {list(plan2.buffer_sizes.values())[0] / 1e9:.1f}GB per node")
|
||||
print(f"Network usage: {plan2.estimated_network_usage / 1e9:.1f}GB")
|
||||
print(f"Explanation: {plan2.explanation}")
|
||||
|
||||
# Example 3: Many nodes with aggregation
|
||||
print("\n\nExample 3: Many nodes with tree aggregation")
|
||||
large_cluster = create_test_cluster(16)
|
||||
large_optimizer = ShuffleOptimizer(large_cluster)
|
||||
|
||||
task3 = ShuffleTask(
|
||||
task_id="shuffle_3",
|
||||
input_partitions=10000,
|
||||
output_partitions=16,
|
||||
data_size_gb=50,
|
||||
key_distribution='uniform',
|
||||
value_size_avg=200,
|
||||
combiner_function='collect'
|
||||
)
|
||||
|
||||
plan3 = large_optimizer.optimize_shuffle(task3)
|
||||
print(f"Strategy: {plan3.strategy.value}")
|
||||
if plan3.aggregation_tree:
|
||||
print(f"Tree height: {int(np.sqrt(len(large_cluster)))}")
|
||||
print(f"Tree structure sample: {list(plan3.aggregation_tree.items())[:3]}")
|
||||
print(f"Explanation: {plan3.explanation}")
|
||||
|
||||
# Simulate execution
|
||||
print("\n\nSimulating shuffle execution...")
|
||||
metrics = optimizer.execute_shuffle(task1, plan1)
|
||||
print(f"Execution time: {metrics.total_time:.3f}s")
|
||||
print(f"Network bytes: {metrics.network_bytes / 1e6:.1f}MB")
|
||||
print(f"Compression ratio: {metrics.compression_ratio:.1f}x")
|
||||
Reference in New Issue
Block a user